I-N Electronic Structure of a Molecule in Solution

نویسندگان

  • Tomohiro KIMURA
  • Nobuyuki MATSUBAYASHI
  • Hirofumi SATO
  • Fumio HIRATA
  • Masaru NAKAHARA
چکیده

Trans and gauche conformational equilibria in the side chains of aspartic acid (Asp) and asparagine (Asn) were investigated by measuring the vicinal spin-spin coupling constants of 1H NMR in acidic, neutral, and basic aqueous solutions over a wide range of temperature (5–90 ̊C). The standard free-energy changes ∆G0 were obtained for the trans to gauche conformational variations on the Cα–Cβ bond with respect to the α-carboxyl group and the β-carboxyl group in Asp (β-amide in Asn) and were decomposed into enthalpic ∆H0 and entropic-T∆S0 components. The hydration of ionic and polar groups in Asp competes against the large intramolecular electrostatic repulsion energy and stabilizes the gauche more than the trans conformer in correspondence to a larger degree of separation of positive and negative partial charges. In the neutral solutions, where both the carboxyl groups are negatively ionized, the hydration part even overwhelms the intramolecular repulsion and leads to a negative ∆H0. The fact that the hydration almost cancels the intramolecular electrostatic repulsion contradicts the widely accepted view that the trans preference in the conformational equilibrium is due to the intramolecular repulsion between α-CO2and β-CO2(or β-CONH2).

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Electronic transport through dsDNA based junction: a Fibonacci model

A numerical study is presented to investigate the electronic transport properties through a synthetic DNA molecule based on a quasiperiodic arrangement of its constituent nucleotides. Using a generalized Green's function technique, the electronic conduction through the poly(GACT)-poly(CTGA) DNA molecule in a metal/DNA/metal model structure has been studied. Making use of a renormalization schem...

متن کامل

Investigation of structural and electronic properties of small Au n Cu m (n+m≤5) nano-clusters for Oxygen adsorption

In this study, the structures, the IR spectroscopy, and the electronic properties of AunCum (n+m≤5) bimetallic clusters were studied and compared with those of pure gold and copper clusters using the generalized gradient approximation (GGA) and exchange correlation density functional theory (DFT). The study of an O2-AunCum system is important to identify the promotion effects of each of the two...

متن کامل

Investigation of structural and electronic properties of small Au n Cu m (n+m≤5) nano-clusters for Oxygen adsorption

In this study, the structures, the IR spectroscopy, and the electronic properties of AunCum (n+m≤5) bimetallic clusters were studied and compared with those of pure gold and copper clusters using the generalized gradient approximation (GGA) and exchange correlation density functional theory (DFT). The study of an O2-AunCum system is important to identify the promotion effects of each of the two...

متن کامل

Quantum Chemical Modeling of N-(2-benzoylphenyl)oxalamate: Geometry Optimization, NMR, FMO, MEP and NBO Analysis Based on DFT Calculations

In the present work, the quantum theoretical calculations of the molecular structure of the (N-(2-benzoylphenyl) oxalamate has been investigated and are evaluated using Density Functional Theory (DFT). The geometry of the title compound was optimized by B3LYP method with 6-311+G(d) basis set. The theoretical 1H and 13C NMR chemical shift (GIAO method) values of the title compound are calculated...

متن کامل

Temperature dependence of I-V characteristics of C60 molecule

Making use of a generalized Green’s function technique and Landauer formalism, the temperature depended current-voltage (I-V) characteristics of C60 molecule, sandwiched between two metallic electrodes are numerically investigated. In addition, the influence of the electron-phonon coupling strength on the electronic properties of the molecule is studied. The I-V characteristics of the molecule ...

متن کامل

Interaction of alanine with lithium. I- the alanine–Li -n (H20) n (0–2) complexes

The energy minima of systems made of an alanine molecule, a lithium cation and a various number of watermolecules have been determined with the help of quantum mechanical computations at the B3LYP DensityFunctional Theory level of computation and the standard 6-311++G (d,p) basis set. Several structures, close inenergy are found and the presence of one or two water molecules around the cation m...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2004